proteometer.params# Classes# Params Module Contents# class proteometer.params.Params(toml_file_path: str)[source]# data_dir = "b'.'"[source]# result_dir = "b'.'"[source]# fasta_file = "b'.'/Uninferable"[source]# metadata_file = "b'.'/Uninferable"[source]# global_prot_file = "b'.'/Uninferable"[source]# global_pept_file = "b'.'/Uninferable"[source]# double_pept_file = "b'.'/Uninferable"[source]# id_separator = ''[source]# ptm_names[source]# ptm_pept_files[source]# ptm_symbols[source]# ptm_abbreviations[source]# experiment_name = ''[source]# search_tool: Literal['maxquant', 'msfragger', 'fragpipe', ''] = ''[source]# experiment_type: Literal['TMT', 'Label-free'][source]# anova_factors[source]# ttest_pairs[source]# abundance_correction[source]# abundance_correction_paired_samples[source]# abudnance_unpaired_sig_thr[source]# batch_correct_samples[source]# log2_scale[source]# batch_correction[source]# pooled_chanel_condition = ''[source]# sig_thr[source]# sig_type: Literal['pval', 'adj-p'][source]# min_replicates_qc[source]# min_pept_count[source]# metadata_batch_col = ''[source]# metadata_sample_col = ''[source]# metadata_group_col = ''[source]# metadata_condition_col = ''[source]# metadata_control_condition = ''[source]# metadata_treatment_condition = ''[source]# id_col = ''[source]# uniprot_col = ''[source]# protein_col = ''[source]# peptide_col = ''[source]# site_col = ''[source]# residue_col = ''[source]# type_col = ''[source]# experiment_col = ''[source]# site_number_col = ''[source]#