proteometer.lip_analysis#

Functions#

lip_analysis(→ tuple[pandas.DataFrame, ...)

Performs statistical analysis on the provided limited proteolysis data.

Module Contents#

proteometer.lip_analysis.lip_analysis(par: proteometer.params.Params, drop_samples: list[str] | None = None) → tuple[pandas.DataFrame, pandas.DataFrame, pandas.DataFrame][source]#

Performs statistical analysis on the provided limited proteolysis data.

Parameters:

  • par (Params) – Parameters for the limited proteolysis analysis, including file paths and settings.

  • drop_samples (list[str], optional) – List of samples to drop from the analysis. Defaults to None.

Returns:

The resulting limited

proteolysis data frames after analysis. These are the double-digested peptide data frame, the rollup of the peptide data to the single site, and the processed global protein data frame (in that order).

Return type:

tuple[pd.DataFrame,pd.DataFrame,pd.DataFrame]