proteometer.params
==================

.. py:module:: proteometer.params


Classes
-------

.. autoapisummary::

   proteometer.params.Params


Module Contents
---------------

.. py:class:: Params(toml_file_path: str)

   .. py:attribute:: data_dir
      :value: "b'.'"



   .. py:attribute:: result_dir
      :value: "b'.'"



   .. py:attribute:: fasta_file
      :value: "b'.'/Uninferable"



   .. py:attribute:: metadata_file
      :value: "b'.'/Uninferable"



   .. py:attribute:: global_prot_file
      :value: "b'.'/Uninferable"



   .. py:attribute:: global_pept_file
      :value: "b'.'/Uninferable"



   .. py:attribute:: double_pept_file
      :value: "b'.'/Uninferable"



   .. py:attribute:: id_separator
      :value: ''



   .. py:attribute:: ptm_names


   .. py:attribute:: ptm_pept_files


   .. py:attribute:: ptm_symbols


   .. py:attribute:: ptm_abbreviations


   .. py:attribute:: experiment_name
      :value: ''



   .. py:attribute:: search_tool
      :type:  Literal['maxquant', 'msfragger', 'fragpipe', '']
      :value: ''



   .. py:attribute:: experiment_type
      :type:  Literal['TMT', 'Label-free']


   .. py:attribute:: anova_factors


   .. py:attribute:: ttest_pairs


   .. py:attribute:: abundance_correction


   .. py:attribute:: abundance_correction_paired_samples


   .. py:attribute:: abudnance_unpaired_sig_thr


   .. py:attribute:: batch_correct_samples


   .. py:attribute:: log2_scale


   .. py:attribute:: batch_correction


   .. py:attribute:: pooled_chanel_condition
      :value: ''



   .. py:attribute:: sig_thr


   .. py:attribute:: sig_type
      :type:  Literal['pval', 'adj-p']


   .. py:attribute:: min_replicates_qc


   .. py:attribute:: min_pept_count


   .. py:attribute:: metadata_batch_col
      :value: ''



   .. py:attribute:: metadata_sample_col
      :value: ''



   .. py:attribute:: metadata_group_col
      :value: ''



   .. py:attribute:: metadata_condition_col
      :value: ''



   .. py:attribute:: metadata_control_condition
      :value: ''



   .. py:attribute:: metadata_treatment_condition
      :value: ''



   .. py:attribute:: id_col
      :value: ''



   .. py:attribute:: uniprot_col
      :value: ''



   .. py:attribute:: protein_col
      :value: ''



   .. py:attribute:: peptide_col
      :value: ''



   .. py:attribute:: site_col
      :value: ''



   .. py:attribute:: residue_col
      :value: ''



   .. py:attribute:: type_col
      :value: ''



   .. py:attribute:: experiment_col
      :value: ''



   .. py:attribute:: site_number_col
      :value: ''