proteometer.peptide

Functions

nip_off_pept(→ str)	Extracts the core peptide sequence surrounded by . characters.
strip_peptide(→ str)	Removes non-alphabetic characters and optionally nips off flanking characters.

Module Contents

proteometer.peptide.nip_off_pept(peptide: str) → str

Extracts the core peptide sequence surrounded by . characters.

Parameters:

peptide (str) – The peptide string containing flanking characters.

Returns:

The core peptide sequence without flanking characters.

Return type:

str

proteometer.peptide.strip_peptide(peptide: str, nip_off: bool = True) → str

Removes non-alphabetic characters and optionally nips off flanking characters.

Parameters:

• peptide (str) – The peptide string to be cleaned.

• nip_off (bool, optional) – Whether to nip off flanking characters. Defaults to True.

Returns:

The cleaned peptide string.

Return type:

str