proteometer.lip_analysis
========================

.. py:module:: proteometer.lip_analysis


Functions
---------

.. autoapisummary::

   proteometer.lip_analysis.lip_analysis


Module Contents
---------------

.. py:function:: lip_analysis(par: proteometer.params.Params, drop_samples: list[str] | None = None) -> tuple[pandas.DataFrame, pandas.DataFrame, pandas.DataFrame]

   Performs statistical analysis on the provided limited proteolysis data.

   :param par: Parameters for the limited proteolysis analysis, including
               file paths and settings.
   :type par: Params
   :param drop_samples: List of samples to drop from the
                        analysis. Defaults to None.
   :type drop_samples: list[str], optional

   :returns:

             The resulting limited
                 proteolysis data frames after analysis.
                 These are the double-digested peptide data frame, the rollup of the
                 peptide data to the single site, and the processed global protein
                 data frame (in that order).
   :rtype: tuple[pd.DataFrame,pd.DataFrame,pd.DataFrame]