Index A | C | E | G | H | I | M | P | R | V | W A annotate_heatmap() (in module valpas.visualization.heatmap) associate() (in module valpas.valpas_core) C calculate_edge_confidence() (in module valpas.confidence_evaluation) calculate_edge_confidence_default() (in module valpas.confidence_evaluation) calculate_venn_overlaps() (in module valpas.visualization.edge_venn_diagram_plot) check_cutoff_range() (in module valpas.utils.checker) check_infile() (in module valpas.utils.checker) check_outfile() (in module valpas.utils.checker) create_detailed_overlap_analysis() (in module valpas.visualization.edge_venn_diagram_plot) create_fig() (in module valpas.visualization.heatmap) create_ppv_heatmap() (in module valpas.visualization.ppv_comparison_heatmap) E export_csv() (in module valpas.io) export_overlap_data() (in module valpas.visualization.edge_venn_diagram_plot) export_xlsx() (in module valpas.io) extract_edges_and_nodes() (in module valpas.visualization.edge_venn_diagram_plot) G generate_negative_interactions() (in module valpas.confidence_evaluation) H heatmap() (in module valpas.visualization.heatmap) I import_asssociation_matrix() (in module valpas.io) import_experiments() (in module valpas.io) M module valpas.confidence_evaluation valpas.io valpas.utils valpas.utils.checker valpas.utils.validator valpas.valpas_core valpas.visualization valpas.visualization.edge_venn_diagram_plot valpas.visualization.graph_visualization valpas.visualization.heatmap valpas.visualization.ppv_comparison_heatmap P plot_network_venn_diagrams() (in module valpas.visualization.edge_venn_diagram_plot) prepare() (in module valpas.valpas_core) R result_to_list() (in module valpas.io) V validate_input() (in module valpas.utils.validator) valpas.confidence_evaluation module valpas.io module valpas.utils module valpas.utils.checker module valpas.utils.validator module valpas.valpas_core module valpas.visualization module valpas.visualization.edge_venn_diagram_plot module valpas.visualization.graph_visualization module valpas.visualization.heatmap module valpas.visualization.ppv_comparison_heatmap module visualize() (in module valpas.valpas_core) W write_outfile() (in module valpas.io)