valpas.visualization.edge_venn_diagram_plot.plot_network_venn_diagrams

valpas.visualization.edge_venn_diagram_plot.plot_network_venn_diagrams(dataframes, labels, title='Network Overlap Analysis', protein1_col='protein_1', protein2_col='protein_2', plot_edges=True, plot_nodes=True, figsize=(16, 8), colors=None, alpha=0.6, show_percentages=True, save_path=None, dpi=300, include_summary=True, subset_font_size=12, title_font_size=14)

Create Venn diagrams for edge and node overlaps between three networks

Parameters:

• dataframes (List[DataFrame]) – List of 3 DataFrames containing network edges

• labels (List[str]) – List of 3 labels for the networks

• title (str) – Overall title for the figure

• protein1_col (str) – Column name for first protein

• protein2_col (str) – Column name for second protein

• plot_edges (bool) – Whether to plot edge overlaps

• plot_nodes (bool) – Whether to plot node overlaps

• figsize (Tuple[int, int]) – Figure size (width, height)

• colors (List[str]) – List of colors for the three sets

• alpha (float) – Transparency for the circles

• show_percentages (bool) – Whether to show percentages in addition to counts

• save_path (str | None) – Path to save the figure

• dpi (int) – Resolution for saved figure

• include_summary (bool) – Whether to include summary statistics

• subset_font_size (int) – Font size for subset labels

• title_font_size (int) – Font size for subplot titles

Returns:

Tuple of (figure, analysis_results)

Return type:

Tuple[Figure, Dict]